![]() ![]() The Moodle Jmol filter makes it incredibly simple for teachers to embed these viewers into teaching material (quizzes, discussion messages, etc). It can easily be embedded into a webpage. #Jmol example usage softwareJTAT Version History.Jmol (Jsmol) is open-source software for interactive 3D viewing of chemical structures. Proteopedia, JmolShell, and Jmol's Export to Web Page added May 2008. This page was started November 2007 JTAT Demo first added DecemJTAT Demo updated Januwith Template. After Jmol creates the page it can be edited in a standard WYSIWG web page editor to add text and other features." At present there are two page formats: a Jmol window with scrolling text and buttons on the left side and a page with snapshots of Jmol images that can be converted to live Jmol by clicking on the images. Some knowledge of Jmol scripting language is helpful, but anything you can do from menus requires no scripting. Jonathan Gutow says: "No knowledge of html or java script is necessary. Jmol Application's Export to Web Page: On the File menu of the Jmol application (as distinct from the web browser mode) is Export to Web Page.The tutorial must be uploaded to a server to provide online access, or the tutorial can be shown offline. Considerably more challenging to use than Proteopedia, but you have more control and the product tutorial is more user friendly. Knowledge of Jmol script language, and a minimal amount of HTML, are required. Insert molecular views with buttons and descriptions using a text editor. #Jmol example usage downloadJmolShell Download a tutorial-development environment to create tutorials that will display in a web browser.Some knowledge of Jmol script language is helpful, and a little HTML (but no javascript) is involved. Extensive help and documentation, including HTML quick-reference. Your tutorial will include a slider for zooming (or slabbing), spin toggle and centering buttons, details that display only when requested, and "How To" put views in Powerpoint slides, etc. (Proteopedia's Scene Authoring Tools are recommended for creating molecular views to put into JTAT.) Supports multiple chapters and views comparing 2, 3, or 4 molecules side by side (with synchronization of mouse-directed rotations or zooms). JTAT Download a template for building tutorials that will display in a web browser.To understand this comparision better, take a look at the JTAT Demonstration vs. Advantages (compared to JTAT): Creating a molecular structure tutorial in Proteopedia is much easier than doing so in JTAT. Limitations (compared to JTAT) are: Jmol is smaller by default (but can easily be enlarged) detail text cannot be hidden no sliders for zoom/slab no centering button synchronization of side-by-side comparisons is iffy. Your tutorials can be protected from editing by others if you wish. The ease of creating molecular structure tutorials here, and their immediate accessibility online, are the great strengths of Proteopedia. No knowledge of Jmol scripting language (nor of javascript) is required. Proteopedia's Scene Authoring Tools make this by far the easiest place to create rotatable, zoomable molecular scenes which are instantly viewable and searchable by anyone. Here you can create customized molecular scenes, which will be online immediately. It already has a machine-generated page for every published macromolecule (>100,000). Proteopedia.Org This is a wiki (as in Wikipedia), meaning that anyone can add text and molecular scenes in Jmol to this website.Please send suggestions for improvement to the email above. Unless otherwise indicated, comparisons are by Eric Martz. JTAT is one of several website-authoring tools for molecular views in Jmol/JSmol. Please send any questions about this site to emartz AT microbio DOT umass DOT edu. Be sure to have a look at the JTAT Demonstration ! This is the primary home and download site for the Jmol Tutorial-Authoring Template (JTAT), which was released in 2008, and updated in 20. ![]()
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